species:   Scscl
pid:       PID1648
parent:    Ssc-milR-124
paralog:   
locus:     NW_001820826.1:1391993-1392086
matures:   ['UAAGUCUAGGACUUUCGAUUGUUC', 'AUGAGUAGACUUCUAGCUUUU']
srr:       SRR12527896
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram NW_001820826.1:1391993-1392086

0 out of bounds
12 alignments
12 proper strand
12 stranded perfect matches

        ***********************                                   ********************        
AUAUUUCGACUAAGUCUAGGACUUUCGAUUGUUCUUCGGUAUCCUCUUCCAAGGAGGCAGCUAGAAUGAGUAGACUUCUAGCUUUUUGGAUAGC
....(((((..(((.((((((...((..(((((((..(((..((((((...))))))..))))))))))...)).))))))))).)))))....
----------UAAGUCUAGGACUUUCGAUUGUUC------------------------------------------------------------ l=24 a=0 c
-----------------------------------------------------------------AUGAGUAGACUUCUAGCUUUU-------- l=21 a=0 c*
----------UAAGUCUAGGACUUUCGAUUG--------------------------------------------------------------- l=21 a=3 ma
--------------------------------------------------------------------AGUAGACUUCUAGCUUUU-------- l=18 a=0 ma*

---------CUAAGUCUAGGACUUUCGAUUG--------------------------------------------------------------- l=22 a=1 
----------UAAGUCUAGGACUUUCGAUUG--------------------------------------------------------------- l=21 a=3 (ma)
----------------UAGGACUUUCGAUUGUUCUUC--------------------------------------------------------- l=21 a=2 
-----------------------UUCGAUUGUUCUUCGGUAUC--------------------------------------------------- l=20 a=1 
-----------------------UUCGAUUGUUCUUCGGUAUCCU------------------------------------------------- l=22 a=1 
-------------------------------------------------------------UAGAAUGAGUAGACUUCUAGC------------ l=21 a=1 
-------------------------------------------------------------UAGAAUGAGUAGACUUCUAGCU----------- l=22 a=1 
------------------------------------------------------------------UGAGUAGACUUCUAGCUUUUUG------ l=22 a=1 
------------------------------------------------------------------UGAGUAGACUUCUAGCUUUUUGG----- l=23 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101100
fn-111
